| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,614,132 | A→G | D101G (GAT→GGT) | marA → | MDR efflux pump AcrAB transcriptional activator MarA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,614,132 | 0 | A | G | 100.0% | 51.5 / NA | 15 | D101G (GAT→GGT) | marA | MDR efflux pump AcrAB transcriptional activator MarA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (7/8); total (7/8) | |||||||||||
AAGTAACGAGCCGATACTCTATCTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCT > NZ_CP009273/1614046‑1614212 | aaGTAACGAGCCGATACTCTATCTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGgtgt > 1:460805/1‑90 (MQ=255) cGAGCCGATACTCTATCTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTccgcc < 1:342629/90‑1 (MQ=255) ctATCTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCg > 2:444724/1‑90 (MQ=255) cTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATg < 1:103396/90‑1 (MQ=255) tGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATGa > 2:463734/1‑90 (MQ=255) ggCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACCTTGGTGTTCCGCCGCATAAATACCGGATGAc < 1:397544/90‑1 (MQ=255) cAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATg > 1:204933/1‑86 (MQ=255) cAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATg < 2:204933/86‑1 (MQ=255) gAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATg > 1:435406/1‑84 (MQ=255) gAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATg < 2:435406/84‑1 (MQ=255) gCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTccgcc > 1:163808/1‑58 (MQ=255) gCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTccgcc < 2:163808/58‑1 (MQ=255) gCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCg > 1:187820/1‑90 (MQ=255) tGACCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCAt > 2:147461/1‑90 (MQ=255) aCCCGAACCTTCAAAAATTACTTTGGTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTa < 1:388236/90‑1 (MQ=255) aTTACTTTGGTGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCt < 2:474101/90‑1 (MQ=255) | AAGTAACGAGCCGATACTCTATCTGGCAGAACGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGCTTTTTACATCCATTAAATCATTACAACAGCT > NZ_CP009273/1614046‑1614212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |