| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 198,290 | A→G | E278G (GAA→GGA) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 198,290 | 0 | A | G | 100.0% | 44.4 / NA | 14 | E278G (GAA→GGA) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/9); total (5/9) | |||||||||||
GGCGTCATTATGGCGGGCAGCCTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGAAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAACCAGGCGTCTATTCCTCAGGCAT > NZ_CP009273/198211‑198371 | ggCGTCATTATGGCGGGCAGCCTGAAAATTGGTCGTTTCTGCATGATCGGCGGGGCCAGCGGAATCAAAGGGCATATGGGGATATTCggc > 1:302859/1‑88 (MQ=255) cATTATGGCGGGCAGCCTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGGGTAATCAACGGGGATATGGGAATATGCGACAAAGt > 1:138803/1‑90 (MQ=255) tATGGCGGGCAGCCTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGAc < 2:16067/90‑1 (MQ=255) gggCAGCCTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAAAGGGCATATGGGAATATGCGACAAAGTGACGGGTAc > 1:413771/1‑90 (MQ=255) cTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATg < 1:460956/90‑1 (MQ=255) gAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATggg < 2:302859/90‑1 (MQ=255) tGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTccc < 1:192076/90‑1 (MQ=255) tGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTccc < 1:274551/90‑1 (MQ=255) cggAGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAAcc < 2:346455/90‑1 (MQ=255) aGCCAGCGTAATCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAACCAgg < 2:327627/90‑1 (MQ=255) aTCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACgg > 1:149423/1‑43 (MQ=255) aTCAACGGGCATATGGGAATATGCGACAAAGTGACGGTTACgg < 2:149423/43‑1 (MQ=255) cGGGCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAACCAGGCGTCTATTCCTCAgg > 2:486680/1‑90 (MQ=255) gCATATGGGAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAACCAGGCGTCTATTCCTCAGGCAt < 2:509655/90‑1 (MQ=255) | GGCGTCATTATGGCGGGCAGCCTGAAAATTGGTCGTTACTGCATGATCGGCGGAGCCAGCGTAATCAACGGGCATATGGAAATATGCGACAAAGTGACGGTTACGGGCATGGGTATGGTGATGCGTCCCATCACTGAACCAGGCGTCTATTCCTCAGGCAT > NZ_CP009273/198211‑198371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |