| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 54.5% | 8.6 / 13.6 | 11 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (6/0); total (6/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGAAAGCAGCGC > NZ_CP009273/2290157‑2290332 | gCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGGGAGGGGAAc > 2:167213/1‑90 (MQ=255)gCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAAc < 2:614626/90‑1 (MQ=255) tGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGGAAGGGGGACGGcaacaa > 2:629583/1‑90 (MQ=255) aaaGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCa < 2:295356/90‑1 (MQ=255) aaaGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCa > 1:213258/1‑90 (MQ=255) gACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGt < 1:115824/90‑1 (MQ=255) ccAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTc < 1:101614/90‑1 (MQ=255) aGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAAACTGCCGTCCTGCAAAACGTCAc > 1:343478/1‑90 (MQ=255) aGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAAAGGGAACAACATCAATTGTTTAAAACGGCCGTCCCGCAAAACGTccc > 2:415563/1‑88 (MQ=255) cGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAAACCGCCCTCCTGCAAAACGTCACGGAACAAACGTTCCAg > 2:608654/1‑90 (MQ=255) cAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAgcgc < 2:213167/90‑1 (MQ=255) tAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGAAAgcagcgc < 2:343478/90‑1 (MQ=255) | GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGAAAGCAGCGC > NZ_CP009273/2290157‑2290332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |