| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 57.1% | 5.1 / 20.6 | 21 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| Reads supporting (aligned to +/- strand): ref base A (3/6); new base T (12/0); total (15/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGC > NZ_CP009273/3175886‑3176044 | tGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTC‑GGCg < 1:114789/90‑1 (MQ=255) gAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGGGGCCACGGTTTTTTGCGCGGTTCTC‑TGCgg > 2:369543/1‑89 (MQ=255) gAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGGAGCCCCGTTTTTTTGGGCGGTTCTC‑GGccg > 1:600928/1‑88 (MQ=255) ttATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCCCGTTTTTTTGGGCGGTTTTC‑GGCGTTC‑TCgg > 1:206029/1‑90 (MQ=255) gTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGGAGCCACGTTTTTTGGCGCGTTTTTC‑GGCGTTC‑TCGGG‑Caaaaaac > 1:184412/1‑88 (MQ=255) gTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGGGGCCACGGTTTTTTGGGCGGTTTTC‑CGCGTTC‑TCGGGCCAAAAAcccc > 2:439978/1‑89 (MQ=255) aCCTCTCATTCTGACCATACTGGCGGGGGGAGCCACGGTTTTTGGCGCGGTTTTC‑CGCGTTC‑TCCGG‑CAAAAACCCCCGAACCCCCTACt > 1:453752/1‑90 (MQ=255) tctcATTCTGACCATACTGGCGGGGGGCGCCACGTTTTTTGGCGCGGTTTTC‑GGCGTTC‑TCCGG‑CAAAAAACCTCGAACCGCCTTCTGGc > 1:165469/1‑90 (MQ=255) tctcATTCTGACCATACTGGCGGGGGGAGCCACGCTTTTTTGTGCGTTTTTCTGCCCTTT‑TCGGG‑CAAAACCCCCCCAACC‑CTTACCGGc > 2:326008/1‑90 (MQ=255) tctcATTCTGACCATACTGGCGGGGGCAGGCACGCTTATTTTCGCGCTTTTC‑TGCGTTC‑TCGGG‑GGAAAAACCCCCAACCGCCTTCTGGc > 2:376871/1‑90 (MQ=255) cATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGtt < 2:282444/90‑1 (MQ=255) gACCATACTGGCGGGGGCAGCCACGTTTTTTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCCCGAACCGCTTACTGGCGGTTTCGCt > 1:13741/1‑90 (MQ=255) ccATACTGGCGGGGGCAGCCACGTTTTTTTGCGCGTTTTTC‑GGCGTTC‑TCGGG‑CAAAAAACCCCGATCCGCTTTCTGGCGTTTTTGCTAg > 1:577920/1‑90 (MQ=255) aTACTGGCGGGGGGAGCCACGTTTTTTGGGGCGGTTGTC‑CGCGTTCTTCGGG‑AAAAAACCC‑CGCACCGCTTTCTTGCGTTTTTGCCAggg > 2:183018/1‑89 (MQ=255) aTACTGGCGGGGGCAGCCACGTTTTTTGGCGCGGTTTTC‑GGCGTTC‑TCGGG‑CAAAAAACCCCGAACCCCTTTCTGGCGGTTTTGCTAggg > 2:199538/1‑89 (MQ=255) aTACTGGCGGGGGCAGCCACGTTTATTTGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCCCGAACCCCTTACTGGCGGTTTTGCTAGGt > 1:269107/1‑90 (MQ=255) gCGGGGGCAGCCACGGTTATTGGCGCGTTTTTT‑TGCGTTC‑TCCGG‑CAAAAAACCCCCCACCCCATACTTGCGGTTTTGCTCTGtttcttt > 2:391104/1‑86 (MQ=255) ggggCAGCCACGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTgcggcg < 2:192303/90‑1 (MQ=255) aGCCACGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGAt < 1:183018/90‑1 (MQ=255) agaCGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCa < 2:80310/88‑1 (MQ=255) ttATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGc < 2:600928/90‑1 (MQ=255) | TGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTC‑GGCGTTC‑TCGGG‑CAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGATCATGTTGC > NZ_CP009273/3175886‑3176044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |