Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 228,175 | 0 | A | G | 53.8% | 7.6 / 13.9 | 13 | G189G (GGA→GGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
Reads supporting (aligned to +/- strand): ref base A (1/5); new base G (7/0); total (8/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.66e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TCAGTCTGGGCGTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGT > NZ_CP009273/228087‑228253 | tCAGTCTGGGCGTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGgag < 1:601805/90‑1 (MQ=255) gggCGTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCaa < 1:136191/90‑1 (MQ=255) gTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGGTTTTAATAcc > 2:442913/1‑90 (MQ=255) gATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTgg < 1:442913/90‑1 (MQ=255) aTGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGa < 2:144187/90‑1 (MQ=255) gcaaGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGaa < 2:630072/88‑1 (MQ=255) aaGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGATTTTTATGCCTGGGGGCGGAGAAgg > 2:142019/1‑90 (MQ=255) aGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGAGTTTAAAACCCGGAGGCGGAGaaagg > 2:699949/1‑87 (MQ=255) gTTACTTCCTATTGGCGATCAGATTGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGGTTTCAATGCCTGGGGCCGGAGAAGGATGaa > 1:81665/1‑90 (MQ=255) aTTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGGGTTTAATTGCCGGGGGCGGGGAAGGATGAAAGCGGTttat > 1:368532/1‑90 (MQ=255) gATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGGTTTTAAAGCCCGGGGCCGGGGAAGGGGGAAAGCGGTTTATTGCttt > 2:195099/1‑90 (MQ=255) tCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGGGGGTTTAAATCCCGGGGCCGGAGAAGGGGGAAAGCGGTTTATTGCttttg > 2:566270/1‑88 (MQ=255) gCGGCCCGGTCATTATGGCGGGAGGTTTTAATTCCTGGGGCCGGAGAAGGATGAACGCGGTATATTGCTTTTCGCGGGGAAAGTCGCTgc > 1:530117/1‑90 (MQ=255) aTTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGt < 1:212412/90‑1 (MQ=255) | TCAGTCTGGGCGTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGT > NZ_CP009273/228087‑228253 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |