| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 36 (1.890) | 22/160 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
GCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360030‑360193 | gCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa < 2:257759/90‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggggg > 2:461365/1‑87 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcgggc > 2:470449/1‑87 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCTGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 2:200173/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCTccccccccccc > 2:286387/1‑89 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTcc < 1:580557/90‑1 (MQ=255) gCAGGAGCTCCGATGACAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTcc < 1:24411/90‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCCCCCCCCCCCCCCCcgg > 1:592320/1‑90 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc < 1:304034/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt < 1:87453/90‑1 (MQ=255) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:472192/46‑1 (MQ=255) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 1:472192/1‑46 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:470449/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTc > 1:146043/1‑90 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc < 1:170955/48‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc > 2:170955/1‑48 (MQ=255) ccGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCTCCCCCCCCCCCCCCCGCCCCTGCTTTTCAACCTTTCAAAACCCCCCCcgcg > 2:89280/1‑88 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGAtt < 1:599256/90‑1 (MQ=255) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:557648/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:31457/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:264532/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:567573/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:592320/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:597650/90‑1 (MQ=35) | GCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360030‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |