Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 579276 579301 26 3 [0] [1] 2 appY DNA‑binding transcriptional activator AppY

TTATAAACAGGAGAGTTATCTCGTTCAAAAAAAATTCATTGTTTATTGTAAGCGACAAAATTAGAAGGGAGTTACCAGTATGCCCCTCTA  >  NZ_CP009273/579186‑579275
                                                                                         |
ttATAAACAGGAGAGTTATCTCGTTCAAAAAAAATTCATTGTTTATTGTAAGCGACAAAATTAGAAGGGAGTTACCAGTATGCCCCTCTa  <  2:181950/90‑1 (MQ=255)
                                                  aGCGACAAAATTAGAAGGGAGTTACCAGTATGCCCCTCTa  >  1:356296/1‑40 (MQ=255)
                                                  aGCGACAAAATTAGAAGGGAGTTACCAGTATGCCCCTCTa  <  2:356296/40‑1 (MQ=255)
                                                                                         |
TTATAAACAGGAGAGTTATCTCGTTCAAAAAAAATTCATTGTTTATTGTAAGCGACAAAATTAGAAGGGAGTTACCAGTATGCCCCTCTA  >  NZ_CP009273/579186‑579275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: