Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1294882	1294926	45	2 [0]	[0] 2	BW25113_RS25865	hypothetical protein

TTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCAT  >  NZ_CP009273/1294834‑1294881                                                | tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCAcatcat  <  1:227498/48‑1 (MQ=255) tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCAcatcat  >  2:227498/1‑48 (MQ=255)                                                | TTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCAT  >  NZ_CP009273/1294834‑1294881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑