Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1798623	1798636	14	2 [0]	[1] 3	espL1	type III secretion system effector EspL1

ATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTC  >  NZ_CP009273/1798570‑1798622                                                     | atgatgAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTc  >  1:57936/1‑53 (MQ=255) atgatgAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTc  <  2:57936/53‑1 (MQ=255)                                                     | ATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTC  >  NZ_CP009273/1798570‑1798622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑