Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	579778	579781	4	3 [0]	[0] 2	appY	DNA‑binding transcriptional activator AppY

TCATATTTCATATGTGCATTTAAAGATTATTATGGTGTCACGCCATCTCATTATTTTGAGAAA  >  NZ_CP009273/579782‑579844 |                                                               tcatatttcatatGTGCATTTAAAGATTATTATGGTGTCACGCCATCTCATTATTTTGAGaaa  >  1:561449/1‑63 (MQ=255) tcatatttcatatGTGCATTTAAAGATTATTATGGTGTCACGCCATCTCATTATTTTGAGaaa  <  2:561449/63‑1 (MQ=255) |                                                               TCATATTTCATATGTGCATTTAAAGATTATTATGGTGTCACGCCATCTCATTATTTTGAGAAA  >  NZ_CP009273/579782‑579844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑