Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1267522	1267537	16	2 [0]	[0] 2	chaA/chaB	sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB

TAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAA  >  NZ_CP009273/1267473‑1267521                                                 | tAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCaa  >  1:117050/1‑49 (MQ=255) tAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCaa  <  2:117050/49‑1 (MQ=255)                                                 | TAGCGTCTCTTAAGAAGAGTCTGACCTGAAAATTCTTATGTTTTGGCAA  >  NZ_CP009273/1267473‑1267521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑