Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3626458	3626525	68	2 [1]	[1] 2	BW25113_RS18065	YhiJ/YhiL family protein

TTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCA  >  NZ_CP009273/3626368‑3626461                                                                                          |     tttGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAAtt      >  2:96250/1‑90 (MQ=255)     cTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCa  <  1:96250/90‑1 (MQ=255)                                                                                          |     TTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCA  >  NZ_CP009273/3626368‑3626461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑