Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1046353	1046410	58	2 [1]	[1] 2	BW25113_RS05135/cspH	IS1‑like element IS1D family transposase/cold shock‑like protein CspH

GCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGCAGGCCATTTACGCGGCAAAATTCCACACGTAATCCTGGTATAAGC  >  NZ_CP009273/1046397‑1046500               |                                                                                          gCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGCAGGCCATTTACGCGGCAAAATTCCACACGTa                <  1:50498/90‑1 (MQ=255)               gcGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGCAGGCCATTTACGCGGCAAAATTCCACACGTAATCCTGGTATAAGc  <  2:229986/90‑1 (MQ=255)               |                                                                                          GCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGCAGGCCATTTACGCGGCAAAATTCCACACGTAATCCTGGTATAAGC  >  NZ_CP009273/1046397‑1046500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑