Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3520891	3520901	11	2 [1]	[0] 3	igaA	intracellular growth attenuator protein IgaA

CCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCT  >  NZ_CP009273/3520902‑3520991 |                                                                                          ccGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAg                                         <  1:285350/51‑1 (MQ=255) ccGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAg                                         >  2:285350/1‑51 (MQ=255) ccGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCt  >  2:132725/1‑90 (MQ=255) |                                                                                          CCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCT  >  NZ_CP009273/3520902‑3520991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑