Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	561857	561882	26	3 [1]	[1] 3	BW25113_RS02765	replication protein P

GGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGA  >  NZ_CP009273/561864‑561953                    |                                                                       ggATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGa  >  1:99932/1‑90 (MQ=255)                    tGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTAcc                              <  1:229249/43‑1 (MQ=255)                    tGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTAcc                              >  2:229249/1‑43 (MQ=255)                    |                                                                       GGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCTGA  >  NZ_CP009273/561864‑561953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑