| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,360,810 | 0 | A | G | 55.6% | 14.1 / 23.5 | 18 | G87G (GGA→GGG) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/8); new base G (10/0); total (10/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.38e-04 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360723‑2360899 | ggTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGtt > 2:1065917/1‑90 (MQ=255) tCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGttta > 1:779585/1‑88 (MQ=255) tCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCa < 2:1163805/90‑1 (MQ=255) gAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGtttatt > 2:1461189/1‑86 (MQ=255) aaGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTc < 1:730038/90‑1 (MQ=255) cAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAat < 2:504881/90‑1 (MQ=255) gCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTTGTCCCGTTATTGGGGACTTAattt > 1:1464979/1‑89 (MQ=255) gtgtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTTATCACGTTTCTTGCGGCTTTATTTTTTTCCtt > 2:516196/1‑90 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACCGTTCTGGCGGCTTAATTTTTTccccttt > 1:1039881/1‑86 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACCGTACTGGCGGGTTAATTTTTATCCtttt > 2:775837/1‑88 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTAGGTACGTTACTTGCGGCTTAATTATTTACCTTGa > 1:969333/1‑90 (MQ=255) tttGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGa < 1:1285118/90‑1 (MQ=255) tttGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGa < 1:451358/90‑1 (MQ=255) gCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCCCGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATc < 1:1120012/90‑1 (MQ=255) gggCAACATTCAGCGATTATGGCGGGGTTTAGTCCCCTTACTGGCGGCCTAATTATTACCCCTTATGCCGCTCTCCCGAATCCCCCcgaa > 1:1582811/1‑90 (MQ=255) gggCAACATTCAGCGATTATGGCGGGGATCAGTCACGCTACTTGCGGCCTAATTTTTATCCTTTATGCCGGTCTCCACAAACCCCCacaa > 2:1527006/1‑90 (MQ=255) tATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCtggt < 2:271870/90‑1 (MQ=255) gCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCa < 2:78282/90‑1 (MQ=255) aTTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGc < 2:739609/90‑1 (MQ=255) | GGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360723‑2360899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |