Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2491959	2492000	42	2 [0]	[1] 2	alaC/ypdA	alanine transaminase/two‑component system sensor histidine kinase YpdA

ACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACC  >  NZ_CP009273/2491910‑2491958                                                 | aCTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTAcc  >  1:626483/1‑49 (MQ=255) aCTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTAcc  <  2:626483/49‑1 (MQ=255)                                                 | ACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACC  >  NZ_CP009273/2491910‑2491958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑