| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 937,169 | 0 | T | G | 58.8% | 3.1 / 19.8 | 17 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| Reads supporting (aligned to +/- strand): ref base T (1/6); new base G (10/0); total (11/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.66e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.65e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACACCG > NZ_CP009273/937092‑937246 | gTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCt < 2:568631/90‑1 (MQ=255)gTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCt > 1:700455/1‑90 (MQ=255) gCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAGGCACGCCCGAAATCTAATGcccc > 1:547201/1‑89 (MQ=255) tGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTACTATCTTTAAAAAGGACGCCCGAAAACTAATGCCCGcc > 2:386812/1‑89 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 2:712905/42‑1 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc > 2:59356/1‑42 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 1:59356/42‑1 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAAAAAGCACGCCAGAAATCTAATGCCCGCATGatcatcatc > 2:33720/1‑90 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTat > 1:712905/1‑41 (MQ=255) cTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATc < 1:466293/90‑1 (MQ=255) cTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAAAAGGCACGCCAGAAAACTAAAGCCCCCATGATCATCATCGATc > 1:433392/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATcc > 1:239099/1‑90 (MQ=255) gCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCcgc < 1:386812/90‑1 (MQ=255) aaCGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTGAACAGGCACGCCAGAAAACTAATGCCCGCATGATCATCATCGATCCGCGCta > 1:107607/1‑90 (MQ=255) aCGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTGAAAGGCACGCCCGAAAACTAATGGCCGCCTGAGCATCATCGATCCGCGCtat > 2:466293/1‑90 (MQ=255) gAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCg < 1:285668/90‑1 (MQ=255) gTGGCGGTGGGGGGGCTTACTATCTTTAAAAGGCACGCCAGAAATCTAAAGCCCGCATAATCATCATCGATCCGCGCTATACCGACAccc > 2:400975/1‑89 (MQ=255) | GTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACACCG > NZ_CP009273/937092‑937246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |