| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 72.2% | 7.4 / 12.1 | 18 | G20G (GGT→GGG) | yegD | molecular chaperone |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (13/0); total (13/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.30e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCACCGGCATGGGGATTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGCGGTAAGCGA > NZ_CP009273/2141133‑2141297 | tcACCGGCATGGGGATTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAAACGCa > 1:286530/1‑90 (MQ=255) ccGGCATGGGGATTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGGCATTCGGGACGGGAAAACGCAttt > 2:593064/1‑90 (MQ=255) ttattTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCTTGTGTGTCGGGGAAACGCATTTTCTTAAAATAGa > 2:667191/1‑90 (MQ=255) ttattTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAACCGCATTTTCTAAAAAAGGa > 1:123532/1‑90 (MQ=255) ttattTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAACCGCATTTGCTAAAAAAGGa > 1:262800/1‑90 (MQ=255) ttattTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGGGACGGGAAAACGCATTTGGTAAAAAAGGa > 1:160794/1‑90 (MQ=255) gtgtTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGGGGCGGGAAACCGCATTTGCTAAAAATGGAAAAAGAc > 1:534805/1‑90 (MQ=255) gtgtTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGGGGCGGGAAAACGCATTTGCTAAAAAAGGAAAAAGAc > 1:529963/1‑90 (MQ=255) tATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAACCGCATTTTCTAAAAAAGGAAAACGACAGCAc > 1:223160/1‑90 (MQ=255) tGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGcc < 2:529963/90‑1 (MQ=255) cTGTTCAGTGGCGGTCATGCGTGACGGGAAAACCCATTTTTTAAAAAAAGAAAAAAACAACACCCCGCTGCCTTCAATTCTTTTCGCGcc > 2:560951/1‑90 (MQ=255) gTTCAGTGGCGGTCATGCGGGGCGGGAAAACGCCTTTGCTAAAAAAAGAAAAAGACAACACGCCGCTGCCCTCAATGCTTTTTGCGccca > 2:87983/1‑88 (MQ=255) tCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCAAGCTGCTGCCTTCAATGCTTTGCGCGCCAAcg < 1:560951/90‑1 (MQ=255) gTGGCGGTCATGCGTGGCGGGAAAACCCATTTTCTAAAAAAGGAAAAAGAAAGCACGCCGCTGCCTTCAATGCTTTTTGCGCCCAAGCGt > 2:84234/1‑90 (MQ=255) gCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGaa < 1:84234/90‑1 (MQ=255) ggTCATGCGGGGCGGGAAACCGCATTTTCTAAAAATGGAAAAAGACAGCACGCCGCTGCCTTCAATGCTTTGCGCGCCAACGCCGGAAGc > 2:73335/1‑90 (MQ=255) aTGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGCGGTa < 1:415479/90‑1 (MQ=255) tGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGCGGTAAGCGa < 2:534805/90‑1 (MQ=255) | TCACCGGCATGGGGATTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGCGGTAAGCGA > NZ_CP009273/2141133‑2141297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |