| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,832,711 | 0 | T | G | 57.1% | 8.3 / 18.5 | 21 | intergenic (‑88/‑172) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (3/6); new base G (12/0); total (15/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.03e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGT > NZ_CP009273/2832637‑2832794 | ttACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAAAATTTAGGTGACCGGGTTCACaaa > 2:637775/1‑90 (MQ=255) cAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATaaaa > 1:261537/1‑90 (MQ=255) cAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGGTTCACAAATATaaaa > 1:175547/1‑90 (MQ=255) cAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTTAGGGGACCGGGTGCACAAATATaaaa > 1:570145/1‑90 (MQ=255) cGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAAc < 1:293091/90‑1 (MQ=255) cGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAAc < 1:455900/90‑1 (MQ=255) cGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAAc < 2:331488/90‑1 (MQ=255) aGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAAAATTCAGGGGACCGGGTTCACAAATATAAAAAATGAACaaa > 2:440947/1‑89 (MQ=255) aGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGGGACCGGTTTCACAAATATAAAAAATGAACAAt > 1:235217/1‑90 (MQ=255) aGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGGGACCGGTTTCACAAATATAAAAAATGAACAAt > 1:452516/1‑90 (MQ=255) tgtACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTCAGGGGACCGGGTTCACAAATATAAAAAAAGAAAAATTc > 2:126506/1‑90 (MQ=255) cTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTTAGGGGACCGGGTTGACCAATATAAAAAATGAAGAATTTActt > 1:741602/1‑89 (MQ=255) gCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAATATTCAGGGGACCGGTTTCACAAATATAAAAAAAGAACAATTCActctc > 2:261199/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAATATTTAGGGGACCGGGTTCACAAATATAAAAAATGAAAAATTCACTCTCTTGCt > 2:236963/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAATATTCAGGGGACCGGGTTCACAAAAATAAAAAATGAACAATTCACTCTCTTGCt > 1:713194/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGGGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCt > 1:564028/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGGGACCGGGTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCt > 1:532123/1‑90 (MQ=255) tCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTATCTTGCTTATTTAGTGACa < 2:741602/90‑1 (MQ=255) aTCGGCGGGAAAAATATTCAGGGGACCGGGTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATg > 2:293200/1‑90 (MQ=255) atatTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAAcc < 2:253297/90‑1 (MQ=255) ttCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGt < 1:556836/90‑1 (MQ=255) | TTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGT > NZ_CP009273/2832637‑2832794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |