| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1089701 = | NA (NA) | 16 (0.550) | 14/164 | 0.6 | 84.2% | intergenic (+11/+30) | dgcT/BW25113_RS05345 | GGDEF domain‑containing protein/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 1417789 = | 3 (0.100) | coding (68/120 nt) | BW25113_RS26130 | hypothetical protein | |||||
GCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACT > NZ_CP009273/1089613‑1089784 | gCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTg > 2:398496/1‑90 (MQ=255)gCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGAGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTg > 1:866475/1‑90 (MQ=255) tttACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATcc > 1:860795/1‑90 (MQ=255) gAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGAGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTAccc < 2:866475/90‑1 (MQ=255) gaCCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATgg > 1:385138/1‑90 (MQ=255) gaCCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATgg < 2:307729/90‑1 (MQ=255) ccGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGac > 1:200159/1‑90 (MQ=255) gggCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGacac < 2:341002/90‑1 (MQ=255) ggCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGAcaca < 1:370133/90‑1 (MQ=255) gtggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGa < 2:822254/90‑1 (MQ=255) gtggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGa < 2:385138/90‑1 (MQ=255) ggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCAtttt > 2:97034/1‑51 (MQ=255) ggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCAtttt < 1:97034/51‑1 (MQ=255) ggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAgg > 1:440266/1‑90 (MQ=255) ggtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAgg > 1:116845/1‑90 (MQ=255) gtTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGt > 2:400693/1‑90 (MQ=255) tgAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCtt < 2:116845/90‑1 (MQ=255) gATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGtttt < 2:101910/90‑1 (MQ=255) aTGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTc > 1:781434/1‑90 (MQ=255) ggtgAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAAt < 2:693803/90‑1 (MQ=255) ggtgAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAAt < 1:583225/90‑1 (MQ=255) gTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTCCCGGACTGAgg < 2:121906/90‑1 (MQ=255) gCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACt > 2:534731/1‑90 (MQ=37) | GCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACT > NZ_CP009273/1089613‑1089784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |