New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 269666 = | NA (NA) | 26 (0.900) | 16/164 | 0.5 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
? | NZ_CP009273 | = 671829 | 0 (0.000) | coding (175/978 nt) | ybeQ | SEL1‑like repeat protein |
GCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671754‑671918 | gCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaata < 2:726407‑M2/90‑15 (MQ=255) aTTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcg > 2:791328‑M2/1‑72 (MQ=255) cGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttct > 2:640866‑M2/1‑59 (MQ=255) cGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttct > 2:429706‑M2/1‑59 (MQ=255) cGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagt < 1:832707‑M2/90‑45 (MQ=255) tttGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:341314‑M2/90‑54 (MQ=255) ttGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaa > 2:412217‑M2/1‑36 (MQ=255) ttGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaa < 1:412217‑M2/40‑5 (MQ=255) gCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 2:410018‑M2/90‑57 (MQ=255) gCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:425864‑M2/90‑57 (MQ=255) gCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggt > 1:500018‑M2/1‑34 (MQ=255) gCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggt < 2:500018‑M2/41‑8 (MQ=255) aaGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 2:89468‑M2/90‑62 (MQ=255) aaGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 2:523597‑M2/90‑62 (MQ=255) aTACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:741241‑M2/90‑67 (MQ=255) cTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc > 1:523597‑M2/1‑21 (MQ=255) cTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc < 2:655067‑M2/90‑70 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga > 2:55072‑M2/1‑19 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 1:586300‑M2/90‑74 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:124064‑M2/90‑74 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:194538‑M2/90‑74 (MQ=255) aTGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 1:362575‑M2/90‑82 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:613544‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:96770‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 2:463759‑M2/1‑1 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 1:463759‑M2/79‑79 (MQ=255) | GCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671754‑671918 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |