| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 54.5% | 3.5 / 13.6 | 11 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base T (6/0); total (8/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCAGAAAAAGCGACATG‑CACATTTTATTTTCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGAC > NZ_CP009273/2380272‑2380445 | gTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGGCAGAAAAAAAGACAAGACAAatttttttt > 2:505657/1‑90 (MQ=255)gTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCAGAAAAAAAAAAAAA‑CACaatttatttt > 2:208103/1‑90 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGGCAGAAAAAAGGAAAAG‑CACAATTTTTTTTTCCTcc > 1:376128/1‑89 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCAGAAAAAGCGACATG‑CACATTTTATTTTCCCTCATc < 2:550966/90‑1 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCAGAAAAAGCGACATG‑CACATTTTATTTTCCCTCATc < 2:69166/90‑1 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCCGAAAAAAAGACAAA‑CACATTTTTTTTTTCCTCCttt‑ttttttta > 1:632322/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCAGAAAAAAAGAAATG‑CAAATTTTTTTTTTTCTCATCT‑Gtttttaa > 2:160834/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCACAAAAAAAGACAAG‑CACAATTTTTTTTTTCTCCTCTGGTTTTaa > 2:137903/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCAAAAAAAAAGGCAAG‑CACATTTTTTTTTTTCTCCTCt‑ttttttaa > 1:379541/1‑87 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGCGGGTCCAGAAAAAACGACAAG‑CACATTTTTTTTTTCCTCATCT‑TTTTTTAAATGCGaaaaaa > 1:47830/1‑87 (MQ=255) aGGCGGGTCCAGAAAAAGCGACATG‑CACATTTTATTTTCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAaaataaa < 2:517469/90‑1 (MQ=255) aaGCGACATG‑CACATTTTATTTTCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCt > 1:57690/1‑90 (MQ=255) g‑CACATTTTATTTTCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAg > 2:151605/1‑90 (MQ=255) tattttCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGAc > 1:111397/1‑90 (MQ=255) | GTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCAGAAAAAGCGACATG‑CACATTTTATTTTCCCTCATCT‑GTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTATTTTGCAGAAATTGAC > NZ_CP009273/2380272‑2380445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |