New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 377145	NA (NA)	6 (0.290)	5/152	1.3	NA	coding (24/914 nt)	BW25113_RS01870	IS3‑like element IS2 family transposase
	?	NZ_CP009273	= 377199	NA (NA)					coding (78/914 nt)	BW25113_RS01870	IS3‑like element IS2 family transposase

AAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/377048‑377145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacgcgACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATAT  <  NZ_CP009273/377199‑377112                                                                                                                                                                                             AAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAG                                                                                                  >  2:252932/1‑90     ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCA                                                                                              <  1:202588/90‑1     ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCA                                                                                              <  1:259000/90‑1      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCA                                                                                              >  2:609602/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:122131/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             <  1:622716/90‑1      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:657762/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:58342/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             <  1:120744/90‑1      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:527508/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             <  1:84698/90‑1      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:511026/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  2:173922/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:482502/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:462350/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  2:19490/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  1:40961/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             <  1:374928/90‑1      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  2:316585/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  2:480912/1‑90      CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCAC                                                                                             >  2:485824/1‑90        CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCTCACGC                                                                                           <  2:41/90‑1        CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGC                                                                                           >  2:222783/1‑90        CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGC                                                                                           <  1:18383/90‑1        CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGC                                                                                           <  2:527695/90‑1         CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCG                                                                                          <  1:556584/90‑1               CTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGGAAAAAAAAGGATAACGCACCCGACACCC                                                                                    >  1:140238/1‑90                                                        AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGACACCCGGGGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGC                                            >  2:74309/1‑90                                                          GCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAA                                          >  2:571780/1‑90                                                          GCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGACACCCGGAGACAACGGCTGACTAAACTTACTCCCCCTCCCCGGGCAA                                          >  1:358679/1‑90                                                                       GACGGGCAAAAAAGTGGATAGCGCACGCGACACCCGGAGACAACGGCTGACTAAACTTACTCCCCAACCCCGGGCAATAAGGGGGCGTGC                             >  1:512632/1‑90                                                                          GGGCAAAAAAGTGGATAGCGCACGCGACACCCGGAGACAACGGCTGACTAAACTTACTCCCCATCCCCCGGCAATAAAGGGGCGGGCGCT                          >  1:357690/1‑90                                                                                           GCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCG         >  2:305230/1‑90                                                                                           GCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCG         >  1:609602/1‑90                                                                                           GCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCG         >  2:636783/1‑90                                                                                           GCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCG         >  2:64167/1‑90                                                                                             GCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTC       <  1:389054/90‑1                                                                                             GCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTC       >  1:36452/1‑90                                                                                             GCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTC       >  2:58601/1‑90                                                                                              CACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCC      <  1:418665/90‑1                                                                                               ACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCA     <  1:487002/90‑1                                                                                                CGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCAT    >  2:28692/1‑90                                                                                                CGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCAT    >  1:315494/1‑90                                                                                                  CGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATAT  >  1:380550/1‑90                                                                                                  CGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATAT  >  1:134997/1‑90                                                                                                                                                                                             AAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAG‑AAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/377048‑377145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcacgcgACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATAT  <  NZ_CP009273/377199‑377112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.