New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 725724	NA (NA)	4 (0.190)	4/152	1.5	NA	coding (686/4194 nt)	rhsC	rhs element protein RhsC
	?	NZ_CP009273	= 725738	NA (NA)					coding (700/4194 nt)	rhsC	rhs element protein RhsC

TGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/725631‑725724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggtgaTTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCGGTA  <  NZ_CP009273/725738‑725654                                                                                                                                                                                     TGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCG                                                                                           >  2:191076/1‑90   CTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGT                                                                                         >  2:333318/1‑90    TGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTG                                                                                        >  2:451480/1‑90                                                         GGGCGCACACAGACGTTCCCCCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCCGCCTCCCGGTGGAACGCCTGGTTGCGCCC                                   >  1:563776/1‑90                                                             GCACACAGACGTTCCACCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGGGGAACGTCTGTGTGCGCCCGAAG                               >  1:310212/1‑90                                                               ACACAGACGTTCCACCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGGGGGACGTCTGGGGGCGCCCGAAGCG                             >  2:494540/1‑90                                                                                  AAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGGCTACGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGGCCACCAGCCCGGGCAGT          >  1:386395/1‑90                                                                                      CGCCGGTGATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCC      >  1:377090/1‑90                                                                                        CCGGTGATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCGG    >  2:319559/1‑90                                                                                          GGTGATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGGGTGCGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCGGTA  >  1:259589/1‑90                                                                                                                                                                                     TGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/725631‑725724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggtgaTTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCGGTA  <  NZ_CP009273/725738‑725654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.