Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3576349	3576351	3	2 [0]	[0] 2	hcp	Hcp1 family type VI secretion system effector

CTGGCTCAATTTATCCTCCCATGAAAAATATTATGGACCACACAAAATGATGACTAAAACCCAAATAAATAAATTAATAAAAATGATGAA  >  NZ_CP009273/3576352‑3576441 |                                                                                          cTGGCTCAATTTATCCTCCCATGAAAAATATTATGGACCACACAAAATGATGACTAAAACCCAAATAAATAAATTAATAAAAATGatgaa  <  2:384405/90‑1 (MQ=255) cTGGCTCAATTTATCCTCCCATGAAAAATATTATGGACCACACAAAATGATGACTAAAACCCAAATAAATAAATTAATAAAAATGatgaa  <  2:587763/90‑1 (MQ=255) |                                                                                          CTGGCTCAATTTATCCTCCCATGAAAAATATTATGGACCACACAAAATGATGACTAAAACCCAAATAAATAAATTAATAAAAATGATGAA  >  NZ_CP009273/3576352‑3576441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑