| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 684,970 | 0 | A | C | 57.1% | 0.6 / 12.1 | 14 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (5/1); new base C (0/8); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.00e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTGTGAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGC > NZ_CP009273/684893‑685045 | ggTGTGAGTCCGGTGGTCGGCGCCCCGTTAGTGGTTAACCCCCCGCGGGTGAACTGCGGGATCACCCCCTGAATCTCACCCTGCGGGCCa < 1:376829/90‑1 (MQ=255) gtgAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATc > 1:193188/1‑90 (MQ=255) ggtggtCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCAccgccct > 1:122382/1‑88 (MQ=255) ggtggtCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGt > 1:646052/1‑90 (MQ=255) ggCGTCACGTTAGTGGTTAACCCCTCGGGGGTGAACTGGGGGATCATCGCCTGAATCTCCCCCTGGGGGCCAATCACCGCCGTAATGCCg < 2:331722/90‑1 (MQ=255) cACTTTAGTGGTTACCCCCCCGCGGGGGAACTGGGGGATCACCCCCTGAATCCCCCCCTGCGGGCCAATCACCGCCGTAATGCCgttgtt < 2:548760/90‑1 (MQ=255) tttAGTGGTTACCCCCCCGGGGGTGAACTGGGGGATCACCGCCTGAATCCCCCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGt < 2:99608/89‑1 (MQ=255) gTTAGTGGTTAACCCCCCGCGGGTGAACGGGGGGATCACCCCCTAAATCCCCCCCGGCGGCCCAACCACCGCCGTAATGCCGTTGTTGGt < 1:133967/90‑1 (MQ=255) tAGTGTTTACCCCCCCGGGGGTGACCGGGGGGATCCCCGCCTGAACCCCCCCCTGGGGCCAAACCACCGCCGTAATGCCGTTGTTGGtgc < 1:109150/90‑1 (MQ=255) tAGTGTTTAACCCCTCGGGGGTGAACGGGGGGATCATCGCCTGAACCCCCCCCGGGGGGCCAATCCCCGCCGTAATGCCGTTGTTGGtgc < 1:423724/90‑1 (MQ=255) gacaggTTACCCCCTCGGGGGTGAACTGGGGGATCATCGCCTGAATCTCCCCCTGGGGGCCAATCACCGCCGTAATGCCGTTGTTGGtgc < 2:529949/86‑1 (MQ=255) atcGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGcgcacgc > 1:418805/1‑90 (MQ=255) gAATCTCCCCCTGCGGGCCAATCACCGCCGTAATGCCg < 2:120737/38‑1 (MQ=255) gAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCg > 1:120737/1‑38 (MQ=255) | GGTGTGAGTCCGGTGGTCGGCGTCACGTTAGTGGTTAACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGC > NZ_CP009273/684893‑685045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |