| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,806,452 | 0 | T | C | 55.6% | ‑0.1 / 11.3 | 18 | L121P (CTC→CCC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| Reads supporting (aligned to +/- strand): ref base T (4/4); new base C (0/10); total (4/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.11e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGG‑TATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGT > NZ_CP009273/3806373‑3806525 | aTTGCCCGTGCTGCTGCCGGAATGGCGAATGACCTGG‑TATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATg > 1:361161/1‑90 (MQ=255) ttGCCGGTGTTGGTGCCGGAATGGCGAATGACCTGG‑AATCGACGGTTTGTCTGGCTACAGCTGCGCCAGGAGCCGTGCTCCCCGCCATGa > 1:28195/1‑90 (MQ=255) ccttgttgtTGCGGGAAGGGAAAATCCCCTGG‑TATCGACGATTTGTCGGTCTACCCCTGCGCCTGTAGCCGTCCCCCCCGCCATGAACca < 1:566652/87‑1 (MQ=255) ccGTGTTGCTGCCGGAATGGCGAATGACCTGG‑TATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:53846/90‑1 (MQ=255) ccGTGTTGCTGCCGGAATGGCAAATGCCCTGG‑TATCGACGTTTTGTCTGGCTACCCCTGCCCCTGTAGCCGTGCTCCCCGCCATGAACca < 2:181919/90‑1 (MQ=255) ccGTGTTGCTGCCGAAAGGGGGAATGCCCTGG‑TATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:211751/90‑1 (MQ=255) gctgcCGAAGGGGCGAATGCCCTGG‑TATCGACGATTTGTCGGGCTCCCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATg < 1:440019/90‑1 (MQ=255) tgcccTGG‑TATCGACTATTTGTCTGGCTCCCCCTGCCCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc < 1:455935/87‑1 (MQ=255) tgcccTGG‑TACCGACGATTTGTCTGGCTCCCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc < 2:254841/87‑1 (MQ=255) cccTGG‑TATCGACGTTTTGTCTGGCTACCCCTGCCCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 2:494654/89‑1 (MQ=255) aCCTGG‑TATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 2:375134/90‑1 (MQ=255) ccTGGTTATCGATGCTTTGTCTGCCTCCCCCTGCCCCTGCAGCCGTCCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 1:142098/90‑1 (MQ=255) g‑TATCGACGTTTTGTCTGGCTCCCCCTGCCCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:361161/90‑1 (MQ=255) g‑TATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:520931/90‑1 (MQ=255) g‑TATCGACGTTTTGTCTGGCTACCCCCGCGCTTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:34839/90‑1 (MQ=255) aTTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTagag > 1:483661/1‑90 (MQ=255) tGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTgg < 1:15884/90‑1 (MQ=255) gcgcCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGt > 1:440644/1‑90 (MQ=255) | ATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGG‑TATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGT > NZ_CP009273/3806373‑3806525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |