| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,378 | T→C | M1A (GTG→GCG) † | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,378 | 0 | T | C | 96.0% | 89.0 / NA | 25 | M1A (GTG→GCG) † | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (15/9); minor base G (1/0); total (16/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
TGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTT > NZ_CP009273/1613292‑1613463 | tGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGaa > 1:238980/1‑90 (MQ=255) ggtaTCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCGTGCAACTAATTACTTGCCAGGGCAACTAATGCGaaa > 1:463312/4‑90 (MQ=255) attcattTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTg < 2:615894/90‑1 (MQ=255) ttGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAAt < 1:571241/90‑1 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGGGAAAAGTACCCGCGATCTGTTCAATGAAATTATTCCa > 1:397887/1‑90 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa > 2:68185/1‑90 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa > 2:439264/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTggg > 1:637498/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTggg > 1:294304/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTggg > 2:23878/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTggg > 2:288890/1‑90 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt < 1:687194/90‑1 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt < 1:87589/90‑1 (MQ=255) ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt < 2:289951/90‑1 (MQ=255) attatCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTa > 1:425490/1‑90 (MQ=255) ttatCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTaa < 2:139455/90‑1 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATc > 1:324199/1‑55 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATc < 2:324199/55‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 1:389861/1‑90 (MQ=255) tAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt > 1:718448/1‑90 (MQ=255) aaTTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATc > 2:419408/1‑90 (MQ=255) gggCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATc > 2:299314/1‑90 (MQ=255) cAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGcc < 1:679022/90‑1 (MQ=255) aCTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg > 1:718947/1‑90 (MQ=255) aaTGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCtt < 1:263074/90‑1 (MQ=255) | TGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTT > NZ_CP009273/1613292‑1613463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |