| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,042,217 | 0 | T | C | 58.3% | 9.0 / 12.7 | 12 | S1267P (TCC→CCC) | yeeJ | inverse autotransporter adhesin YeeJ |
| Reads supporting (aligned to +/- strand): ref base T (4/1); new base C (0/7); total (4/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTATTGGCGACACAGCGGCGGCAAAAATTATCGAGTTGGCGCCTGTCCCAGACAGCATAATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCG > NZ_CP009273/2042134‑2042303 | ttATTGGCGACACAGCGGCGGCAAAAATTATCGAGTTGGCGCCTGTCCCAGACAGCATAATCGCCGGTACCCCGCAGAACAGCTCCGGCa < 2:290344/90‑1 (MQ=255) ggcggaAAAAATTATGGGGTGGGCGCCTGCCCCAGACAGAAAAATCGCCGGTCCCCCGAAAAACAGCCCCGGCAGCGTCATCACCGCcac < 2:90568/90‑1 (MQ=255) ggcggaAAAAATTATCGAGTGGGCCCCTCCCCCAAACAGAAAAACCGCCGTTCCCCCGCAAAACAGCCCCGGCAGCGTCATCACCGCcac < 2:349321/90‑1 (MQ=255) ggaaaaatTTATGGGGTGGGCGCCTGCCCCAGACAGCATAACCGCCGTTCCCCCGCAGAACAGCCCCGGCGGCGTCATCACCGCCACAGt < 2:107151/87‑1 (MQ=255) ggaaaaaaTTATCGAGTTGGCGCCTGCCCAAAACAGAAAAACCGCCGGTCCCCCGCAGAACAGCCCCGGCAGCGTCATCACCGCCACAGt < 2:110827/87‑1 (MQ=255) cgcCTCCCCAAGACACCATAACCGCCGGTCCCCCGAAGAACGGCCCGGGCGGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTc < 2:1038730/90‑1 (MQ=255) gCATAATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGa > 1:141107/1‑90 (MQ=255) gCATAATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGa > 2:389459/1‑90 (MQ=255) ccGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGc > 1:76114/1‑90 (MQ=255) cgaaGAACACCCCCGGCAGCGTCATCCCCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCa < 2:141107/87‑1 (MQ=255) cGCAAAACGGCCCCGGCGGCGTCACCCCCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCa < 2:423953/90‑1 (MQ=255) aGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCg > 2:534747/1‑90 (MQ=255) | TTATTGGCGACACAGCGGCGGCAAAAATTATCGAGTTGGCGCCTGTCCCAGACAGCATAATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCG > NZ_CP009273/2042134‑2042303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |