| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,512,072 | (T)6→5 | coding (352/522 nt) | aroK ← | shikimate kinase AroK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,512,067 | 0 | T | . | 100.0% | 58.6 / NA | 14 | coding (357/522 nt) | aroK | shikimate kinase AroK |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (8/6); total (8/6) | |||||||||||
CATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGAC > NZ_CP009273/3511991‑3512146 | cATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCtg < 1:155872/90‑1 (MQ=255) aCAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCtgcgt < 1:353081/90‑1 (MQ=255) aCAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCtgcgt < 2:319672/90‑1 (MQ=255) aGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCAc > 1:88327/1‑81 (MQ=255) aGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCAc < 2:88327/81‑1 (MQ=255) gCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCtgcgtgcg > 2:25930/1‑90 (MQ=255) cGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCTgcgtgcgt > 2:372048/1‑90 (MQ=255) cGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTc < 2:327182/90‑1 (MQ=255) cgcgGCGGTGTTTCAACGTGCAGCAACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGa > 2:63160/1‑90 (MQ=255) gTGCAGCAACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGaa > 1:320000/1‑90 (MQ=255) gcagcaACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAg > 2:186425/1‑90 (MQ=255) gcagcaACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAg > 2:352719/1‑90 (MQ=255) gcagcaACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGGCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAg > 2:374041/1‑90 (MQ=255) agcaACGGGCG‑TTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGAc < 1:400107/90‑1 (MQ=255) | CATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGAC > NZ_CP009273/3511991‑3512146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |