| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 5 (0.360) | 5/166 | 0.8 | 33.3% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1853017 = | 10 (0.710) | coding (74/1044 nt) | ydjJ | NAD(P)‑dependent alcohol dehydrogenase | |||||
GGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACC > NZ_CP009273/1852933‑1853102 | acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGGc < 1:179467‑M2/6‑1 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgaatgaggcagcggagaagaatttccccgcttattcgcaacttccTTAGGCACTGGt > 2:179467‑M2/79‑90 (MQ=255) aaaaCCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAaat > 1:169746/1‑90 (MQ=255) aaaCCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAaata < 2:57062/90‑1 (MQ=255) aTGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAAtttt > 1:357204/1‑90 (MQ=255) aTGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAAtttt < 2:169746/90‑1 (MQ=255) tCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATtgtg > 2:101293/1‑90 (MQ=255) aCCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCgg > 1:142534/1‑90 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCt > 1:237170‑M2/42‑90 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCt < 1:367778‑M2/49‑1 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAata > 1:218861‑M2/36‑90 (MQ=255) aCATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATAtt < 1:7376/90‑1 (MQ=255) aaTCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAAttttt > 2:329812/1‑90 (MQ=255) aaaCTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCAttt < 2:45595/90‑1 (MQ=255) ttcttTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCAcc < 2:40683/90‑1 (MQ=255) | GGAATAAACGGGCCTGATTCAAAACCATGTACATCTGAACCACAAATACCGACATATTCTACTTTAATCAAAACTTCATCTTCTTTAGGCACTGGTATTTCTGCTGAAATAATTTTCATTGTGCCCGGCACCTGCAATATTGCTTTTGAATTTTTCATTTTGAATCCACC > NZ_CP009273/1852933‑1853102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |