Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3261522	3261537	16	5 [1]	[0] 2	BW25113_RS16190	hypothetical protein

CCTTCTGTCATGATCCGAATCCAACCGGAAAATATGAGTCCATTCATTATAGATATTTCTACAGGAGAACATGATGATTATATCATACAAACATT  >  NZ_CP009273/3261432‑3261526                                                                                          |      ccTTCTGTCATGATCCGAATCCAACCGGAAAATATGAGTCCATTCATTATAGATATTTCTACAGGAGAACATGATGATTATATCATACaa       <  1:287902/90‑1 (MQ=255) ccTTCTGTCATGATCCGAATCCAACCGGAAAATATGAGTCCATTCATTATAGATATTTCTACAGGAGAACATGATGATTATATCATACaa       <  1:8274/90‑1 (MQ=255)      tGTCATGATCCGAATCCAACCGGAAAATATGAGTCCATTCATTATAGATATTTCTACAGGAGAACATGATGATTATATCATACAAACAtt  <  2:232401/90‑1 (MQ=255)                                                       atTTCTACAGGAGAACATGATGATTATATCATACaa       >  1:82125/1‑36 (MQ=255)                                                       atTTCTACAGGAGAACATGATGATTATATCATACaa       <  2:82125/36‑1 (MQ=255)                                                                                          |      CCTTCTGTCATGATCCGAATCCAACCGGAAAATATGAGTCCATTCATTATAGATATTTCTACAGGAGAACATGATGATTATATCATACAAACATT  >  NZ_CP009273/3261432‑3261526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑