Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1072827	1072830	4	2 [0]	[1] 2	putA	trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase

TGGCTCGCCCATACCATGCAGGCACTGGAACTCGTACTGACCCGG  >  NZ_CP009273/1072782‑1072826                                             | tGGCTCGCCCATACCATGCAGGCACTGGAACTCGTACTGACCCgg  <  1:311947/45‑1 (MQ=255) tGGCTCGCCCATACCATGCAGGCACTGGAACTCGTACTGACCCgg  >  2:311947/1‑45 (MQ=255)                                             | TGGCTCGCCCATACCATGCAGGCACTGGAACTCGTACTGACCCGG  >  NZ_CP009273/1072782‑1072826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑