Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2100677	2100703	27	2 [1]	[0] 2	wzy	O16 family O‑antigen polymerase

TCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGA  >  NZ_CP009273/2100704‑2100743 |                                        tCATTAATCCGTACTCATTATATTTTTCACTTGATAAaga  <  1:109734/40‑1 (MQ=255) tCATTAATCCGTACTCATTATATTTTTCACTTGATAAaga  >  2:109734/1‑40 (MQ=255) |                                        TCATTAATCCGTACTCATTATATTTTTCACTTGATAAAGA  >  NZ_CP009273/2100704‑2100743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑