Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	997046	997055	10	3 [0]	[1] 2	elfC	fimbrial biogenesis usher protein

TAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTCTGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGC  >  NZ_CP009273/996956‑997045                                                                                          | tagtCAACGTGGTTCCCACCAAAGGGGCGTTGGTTCTGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGc  <  2:167923/90‑1 (MQ=255)                                    cTGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGc  >  1:119443/1‑55 (MQ=255)                                    cTGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGc  <  2:119443/55‑1 (MQ=255)                                                                                          | TAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTCTGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGC  >  NZ_CP009273/996956‑997045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑