Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1195573	1195581	9	2 [1]	[1] 4	intE	site‑specific integrase

AAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATA  >  NZ_CP009273/1195483‑1195576                                                                                          |     aaGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGa      >  1:279161/1‑90 (MQ=255)     gaAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAata  <  1:2285/90‑1 (MQ=255)                                                                                          |     AAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATA  >  NZ_CP009273/1195483‑1195576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑