Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1700462	1700495	34	2 [1]	[1] 3	rsxA	electron transport complex subunit RsxA

CTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAGGTCTTATGTCTCTGGCCTTTATGGGCTTT  >  NZ_CP009273/1700495‑1700584  |                                                                                         cTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAGGTCTTATGTCTCTGGCCTTTATGGGCttt  <  2:247654/90‑1 (MQ=255)  ttGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAg                               <  1:87663/60‑1 (MQ=255)  ttGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAg                               >  2:87663/1‑60 (MQ=255)  |                                                                                         CTTGCTGTGGCTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAGGTCTTATGTCTCTGGCCTTTATGGGCTTT  >  NZ_CP009273/1700495‑1700584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑