Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1998515	1998600	86	2 [1]	[1] 2	fliD	flagellar filament capping protein FliD

TGAATAAATTAACTAAAGACTACAACGCCGCCAGCGATCGCATTGATGCGCAGGTCGCTCGCTACAAAGAACAATTTACCCAACTGGACGTTTTA  >  NZ_CP009273/1998596‑1998690      |                                                                                          tGAATAAATTAACTAAAGACTACAACGCCGCCAGCGATCGCATTGATGCGCAGGTCGCTCGCTACAAAGAACAATTTACCCAACTGGACg       >  1:54991/1‑90 (MQ=255)      aaaTTAACTAAAGACTACAACGCCGCCAGCGATCGCATTGATGCGCAGGTCGCTCGCTACAAAGAACAATTTACCCAACTGGACGTTTTa  >  1:248077/1‑90 (MQ=255)      |                                                                                          TGAATAAATTAACTAAAGACTACAACGCCGCCAGCGATCGCATTGATGCGCAGGTCGCTCGCTACAAAGAACAATTTACCCAACTGGACGTTTTA  >  NZ_CP009273/1998596‑1998690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑