Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	158399	158436	38	2 [1]	[0] 2	thpR	RNA 2',3'‑cyclic phosphodiesterase

GTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCA  >  NZ_CP009273/158437‑158526 |                                                                                          gtgtgGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCa  <  1:109321/90‑1 (MQ=255) gtgtgGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCa  >  2:106643/1‑90 (MQ=255) |                                                                                          GTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCA  >  NZ_CP009273/158437‑158526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑