Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1205291	1205293	3	2 [1]	[0] 3	pinE	site‑specific DNA recombinase

TTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGC  >  NZ_CP009273/1205294‑1205383 |                                                                                          ttATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGc                                                 >  1:186401/1‑43 (MQ=255) ttATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGc                                                 <  2:186401/43‑1 (MQ=255) ttATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGGGTAGTATGCGGCATCTTTTCGTGCTGGGGGGGGGGGTgcgc  >  2:37680/1‑90 (MQ=255) |                                                                                          TTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGC  >  NZ_CP009273/1205294‑1205383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑