Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	1,613,378	T→C	M1A (GTG→GCG) †	marR →	multiple antibiotic resistance transcriptional regulator MarR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	1,613,378	0	T	C	100.0%	25.5 / NA	8	M1A (GTG→GCG) †	marR	multiple antibiotic resistance transcriptional regulator MarR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (7/1);  total (7/1)

TACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTG  >  NZ_CP009273/1613322‑1613460                                                         |                                                                                   taCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAattat                                                   <  2:256684/90‑1 (MQ=255)     tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa                                               >  2:23250/1‑90 (MQ=255)     tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa                                               >  2:244918/1‑90 (MQ=255)                     tCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATcc                               >  2:343979/1‑90 (MQ=255)                         cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat                           >  2:289380/1‑90 (MQ=255)                           gCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATgg                         >  1:264395/1‑90 (MQ=255)                                             gggCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATc       >  2:256603/1‑90 (MQ=255)                                                  aCTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg  >  1:87145/1‑90 (MQ=255)                                                         |                                                                                   TACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTG  >  NZ_CP009273/1613322‑1613460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑