| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3219546 | 44 (1.420) | 4 (0.140) | 4/150 | 1.9 | 8.9% | intergenic (+16/‑47) | ebgC/ygjI | beta‑galactosidase subunit beta/amino acid permease |
| ? | NZ_CP009273 | = 3219551 | 43 (1.550) | intergenic (+21/‑42) | ebgC/ygjI | beta‑galactosidase subunit beta/amino acid permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3219449‑3219546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaaCTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGT < NZ_CP009273/3219551‑3219469 GTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACG > 1:849613/1‑90GTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACG > 2:796770/1‑90 TATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGG < 2:713296/90‑1 TTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA > 1:546477/1‑90 TTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA < 1:759219/90‑1 ATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCAT > 1:736608/1‑90 AAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCCCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTC > 2:523637/1‑90 GTTATTTCCATAACAAATAACAACTACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGT > 2:396983/1‑90 ACGGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACC < 1:396983/90‑1 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGC > 1:221177/1‑90 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGC > 1:457387/1‑90 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGC > 2:108091/1‑90 GGCGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGC > 2:849613/1‑90 CGGCAAACTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGT < 2:31014/90‑1 GTATCGGTTTATCTGCAATAACGCGGTCAAAAAAGTGGTTCTCAAAGTCACCATCGAAGATGGTTATTTCCATAACAAATAACAACTACGGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3219449‑3219546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaaCTCCTTTTGCCGCCGTAGTTGTTATTTGTTATGGAAATAACCATCTTCGATGGTGACTTTGAGAACCACTTTTTTGACCGCGT < NZ_CP009273/3219551‑3219469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |