| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 42989 = | 106 (3.410) | 4 (0.150) | 4/148 | 1.9 | 4.3% | coding (587/771 nt) | fixA | electron transfer flavoprotein FixA |
| ? | NZ_CP009273 | 43085 = | 85 (3.100) | coding (683/771 nt) | fixA | electron transfer flavoprotein FixA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/43086‑42989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgccgaAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCATTTA > NZ_CP009273/43085‑43172 TTTCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGACTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGC < 1:153412/90‑1 TTCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCC < 1:138022/90‑1 TCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCG < 1:390146/90‑1 TCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCG < 2:71697/90‑1 GCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGC < 2:573810/90‑1 CGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCC < 1:799743/90‑1 AACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGAAACA < 1:641086/90‑1 CTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGAAACAGCGCGAACGTC < 1:595/90‑1 ACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGAAACAGCGCGAACGTCAGC < 1:778844/90‑1 GGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGAAACAGCGCGAACGTCAGCGCAT < 2:377961/90‑1 GCCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAA > 2:557467/1‑90 GCCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAA < 1:781262/90‑1 CCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAG > 1:65195/1‑90 CCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAG < 1:647897/90‑1 CCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAG > 2:806040/1‑90 CCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGAC > 2:617258/1‑47 CCGCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGAC < 1:617258/47‑1 GCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTC > 2:612343/1‑90 GCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTC > 2:838473/1‑90 GCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTC < 1:820582/90‑1 GCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTC > 1:599866/1‑90 GCGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCACAAAGTC > 1:810321/1‑90 CGCCGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCA > 2:377068/1‑90 CGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCATTT < 2:504522/90‑1 CGAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCATTT < 1:729584/90‑1 GAAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCATTTA < 1:142971/90‑1 TTTCGGCGCGGCAACCTGTTGTTCTGACCAGGCTGCCTCTGCGTTAAAACCAATATCCGCCGCCGACCATACCTGGACGGGCTTTTTCGCCGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/43086‑42989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgccgaAACAGCGCGAACGTCAGCGCATCGTGATTGAAGGCGACGGCGAAGAACAGATCGCCGCATTTGCTGAAAATCTTCGCAAAGTCATTTA > NZ_CP009273/43085‑43172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |