| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 254374 | 0 (0.000) | 44 (1.430) | 21/166 | 0.3 | 100% | coding (59/402 nt) | crl | sigma factor‑binding protein Crl |
| ? | NZ_CP009273 | 269667 = | NA (NA) | intergenic (+3/+145) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase | |||||
AACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAG > NZ_CP009273/254288‑254463 | aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCAGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaa < 2:145997‑M1/90‑4 (MQ=255) tGCATCACAACAGGAGATAGCAATGACGTTACGGAGTGGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGgaaggtgcg > 1:32450‑M1/1‑81 (MQ=255) cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaa < 1:710210‑M1/90‑12 (MQ=255) aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaat > 2:567713‑M1/1‑78 (MQ=255) acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataag < 1:567713‑M1/90‑16 (MQ=255) caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagc < 1:68138‑M1/90‑17 (MQ=255) agaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaa > 2:284791‑M1/1‑67 (MQ=255) tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagc < 2:892813‑M1/80‑17 (MQ=255) tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagc > 1:892813‑M1/1‑64 (MQ=255) tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaa < 2:547504‑M1/67‑4 (MQ=255) tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaa > 1:547504‑M1/1‑64 (MQ=255) aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggc < 2:19389‑M1/90‑35 (MQ=255) gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctg > 1:790453‑M1/1‑54 (MQ=255) tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgac > 2:602‑M1/1‑52 (MQ=255) tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgac > 2:374427‑M1/1‑52 (MQ=255) tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgac < 2:830930‑M1/90‑39 (MQ=255) ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactc < 2:486038‑M1/90‑41 (MQ=255) gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 1:631546‑M1/1‑46 (MQ=255) gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:695704‑M1/1‑46 (MQ=255) gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 2:238147‑M1/90‑48 (MQ=255) ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:269635‑M1/90‑53 (MQ=255) gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc > 2:729108‑M1/1‑36 (MQ=255) aGATTGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 2:722730‑M1/1‑29 (MQ=255) tGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactca < 1:123305‑M1/66‑42 (MQ=255) tGATCAAAAAATTTACCGCACTAGGgaaggtgcgaataagcggggaaattcttctcggctgactca > 2:123305‑M1/1‑25 (MQ=255) cTAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 2:40307‑M1/1‑5 (MQ=255) tAGGgaaggtgcgaataagggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:390999‑M1/90‑87 (MQ=255) tAGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:364261‑M1/90‑87 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:805306‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:805973‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:847659‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:311365‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:47015‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:622645‑M1/90‑88 (MQ=255) aGGgaaggtgcgaataagcggagaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:625978‑M1/90‑88 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:688201‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:21456‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:215779‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:794647‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:789912‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:736831‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:388324‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:593310‑M1/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:593310‑M1/88‑87 (MQ=255) ggaaggtgcgaataagcgggggaattcttctcggctggctcagccatttcatttcttcatgtttgagccgtttttttctcccgtaaatgc > 1:713411‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:125804‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:57361‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:488650‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:611142‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:786890‑M1/1‑1 (MQ=255) | AACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAG > NZ_CP009273/254288‑254463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |