| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 55 (1.770) | 31/168 | 0.1 | 56.1% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 43 (1.380) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360016‑360193 | aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCaa > 1:49414/1‑90 (MQ=255) ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt > 1:534955/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:8088/90‑1 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:547127/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:33322/90‑1 (MQ=255) tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg‑‑g > 1:185905/1‑90 (MQ=255) cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg‑‑gc‑gg < 2:543073/90‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg‑‑gc‑ggggg > 2:283232/1‑88 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 1:893901/1‑74 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:893901/74‑1 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGGGgcccgccc > 2:260066/1‑90 (MQ=255) tCCAGTGCAGGAGCGCCGATGATAAGCTGTCAACCATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCa < 1:809686/90‑1 (MQ=38) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGGCCCGccccccccccc > 2:813838/1‑89 (MQ=39) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGC‑GGGCGTCCTGCCCGCCACCCTCCg > 1:828342/1‑90 (MQ=38) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGGGGCCTTCCCCCCCCCCCCCCGGcc > 2:863688/1‑90 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGcc < 1:455078/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GCGGGGGGCCCGGCCCCCCCCCCCCCGGCCCGt > 2:109048/1‑90 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGGGGCCTGGCCCCCCCCCCCCCGGCCggt > 2:128699/1‑88 (MQ=37) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGGGGCCCGCCCCCCCCCCCCCCGGcccct > 2:278043/1‑87 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:313476/41‑1 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 2:313476/1‑41 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGGGGCCTCGCCCCCCCCCCCCCCGCCGCttc‑ttctcca > 1:479941/1‑86 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCaa < 1:125782/90‑1 (MQ=255) tCCGACCCCCAATGCCTGGCAGTTTATG‑‑CG‑GGGCGCCCCGCCCGCCGCCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCcggc < 1:414453/90‑1 (MQ=11) ccGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGGCCCGCCCCCCCCCCCCCCGGCCCGTGCTTTCCCAACGTTCAAACCCCCCCCcgcc > 1:50207/1‑88 (MQ=9) gATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCGGCCCCCCACCCCCCCGGCCCCTGC‑TTCCCATCGTTTAAATCCGCTCCcggcggg > 1:88722/1‑89 (MQ=14) tCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:813838/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:595947/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCCGCCCCCCCCCCCCCCGGCCCCTGC‑TTCGCCACCTTCAAAACCCCCCCCCGCGGGtt > 2:291233/1‑90 (MQ=9) ccAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:109048/90‑1 (MQ=38) ccAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:764372/90‑1 (MQ=38) cAATTCCTGGCAGTTTATG‑‑GC‑GGGCGGCCTCCCCCCCCCCCCCCCGGCCGTTGT‑TTTCCAACGTTCAAATCCCCCCCCCGCGGGtttttt > 2:764372/1‑87 (MQ=2) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:615471/90‑1 (MQ=25) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:452182/90‑1 (MQ=25) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:799654/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:200657/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:49414/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:534955/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:120823/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:651858/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:737069/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:798702/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:413880/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:394525/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:101421/90‑1 (MQ=35) aaTTCCTGGCAGTTTATG‑‑GC‑GGGCGCCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:260066/90‑1 (MQ=25) | ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATG‑‑GC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGC‑TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360016‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |