Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1539082	1539082	1	2 [0]	[0] 2	BW25113_RS07710	leucine‑rich repeat domain‑containing protein

GGGGAATAAAGTTCCAATATCGGATGTATTATTAGTATCAATG  >  NZ_CP009273/1539039‑1539081                                           | ggggAATAAAGTTCCAATATCGGATGTATTATTAGTATCAAtg  >  1:546289/1‑43 (MQ=255) ggggAATAAAGTTCCAATATCGGATGTATTATTAGTATCAAtg  <  2:546289/43‑1 (MQ=255)                                           | GGGGAATAAAGTTCCAATATCGGATGTATTATTAGTATCAATG  >  NZ_CP009273/1539039‑1539081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑