Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2781142	2781142	1	5 [0]	[0] 3	BW25113_RS26005	alpha‑amylase family glycosyl hydrolase

TTACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTACAC  >  NZ_CP009273/2781052‑2781141                                                                                          | ttACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTacac  <  1:417642/90‑1 (MQ=255) ttACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTacac  <  1:550067/90‑1 (MQ=255) ttACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTacac  <  1:880962/90‑1 (MQ=255)                                               gATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTacac  >  1:517019/1‑44 (MQ=255)                                               gATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTacac  <  2:517019/44‑1 (MQ=255)                                                                                          | TTACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGCTTAAAAATTATAATGAGCGGTTACAC  >  NZ_CP009273/2781052‑2781141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑