| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2325337 | 30 (0.740) | 3 (0.080) | 3/154 | 2.8 | 9.5% | pseudogene (2455/4515 nt) | BW25113_RS11635 | alpha‑2‑macroglobulin family protein |
| ? | NZ_CP009273 | = 2325338 | 30 (0.820) | pseudogene (2454/4515 nt) | BW25113_RS11635 | alpha‑2‑macroglobulin family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCG > NZ_CP009273/2325253‑2325423 | aCGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAggcg < 1:440354‑M2/90‑5 (MQ=255) aTCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAAcc < 1:238048/90‑1 (MQ=255) aTCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAAcc < 2:669080/90‑1 (MQ=255) ccATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAggcgcaactaa > 1:4248‑M2/1‑79 (MQ=255) ccATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCgg < 2:184876/90‑1 (MQ=255) ccATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCgg < 1:979024/90‑1 (MQ=255) ccGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGc < 2:175774/90‑1 (MQ=255) cccTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGcc < 2:720641/89‑1 (MQ=255) tCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCtggcgcaactaaccgcagcgagcggcgagtaaaa > 2:668819‑M1/1‑56 (MQ=255) tCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCg > 1:918248/1‑90 (MQ=255) tCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCg > 2:406292/1‑90 (MQ=255) cGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAg > 2:967763/1‑90 (MQ=255) ccGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGcc > 2:42533/1‑79 (MQ=255) ccGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGcc < 1:42533/79‑1 (MQ=255) ccGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCt < 2:307980/90‑1 (MQ=255) ccGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCt > 2:194940/1‑90 (MQ=255) gTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGa > 1:1081131/1‑90 (MQ=255) tGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCtggcgcaactaaccgcagcgagcggcgagtaaaaatgcttga > 1:502291‑M1/1‑48 (MQ=255) tGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGAt > 1:966988/1‑90 (MQ=255) tGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGAt > 1:702361/1‑90 (MQ=255) aCGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATaaa < 1:551521/90‑1 (MQ=255) gTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACg > 2:745935/1‑90 (MQ=255) tCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAggcgcaactaaccgcagcgagcggcgagtaaaaatgcttgaacgtcca > 1:502291‑M2/1‑42 (MQ=255) tCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGAc < 2:702361/90‑1 (MQ=255) tCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGAc < 1:170949/90‑1 (MQ=255) aGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGa < 1:367540/90‑1 (MQ=255) cATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACt < 2:1055404/90‑1 (MQ=255) cATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACt < 1:345683/90‑1 (MQ=255) tttttACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTgg > 2:298501/1‑90 (MQ=255) ttttACTCGCCGCTCGCTGCGGTTAGTTGCGCCAggcgcaactaaccgcagcgagcggcgagtaaaaatgcttgaacgtccacggcgtga > 2:668819‑M2/1‑34 (MQ=255) ttACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGc < 2:1081131/90‑1 (MQ=255) ccgcTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGc > 1:879717/1‑83 (MQ=255) ccgcTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGc < 2:879717/83‑1 (MQ=255) ccgcTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTGCg > 1:986337/1‑90 (MQ=255) ccgcTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACg < 2:694896/90‑1 (MQ=255) ttAGTTGCGCCtggcgcaactaaccgcagcgagcggcgagtaaaaatgcttgaacgtccacggcgtgaagaggtggataccgcggcatgg > 1:4248‑M1/1‑11 (MQ=255) aGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGccc > 1:733346/1‑90 (MQ=255) cgcCtggcgcaactaaccgcagcgagcggcgagtaaaaatgcttgaacgtccacggcgtgaagaggtggataccgcggcatggatgccgt < 1:440354‑M1/90‑87 (MQ=255) | ACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCG > NZ_CP009273/2325253‑2325423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |