| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3874015 | 38 (0.940) | 3 (0.080) | 3/150 | 2.8 | 8.1% | coding (567/1074 nt) | recF | DNA replication/repair protein RecF |
| ? | NZ_CP009273 | = 3874077 | 35 (0.990) | coding (505/1074 nt) | recF | DNA replication/repair protein RecF | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGC > NZ_CP009273/3873931‑3874102 | aGTCAGAGAAAACTCAGGGGGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGAt > 2:306419/1‑90 (MQ=255)aGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGAt > 1:449475/1‑90 (MQ=255) aaaCTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGc < 2:737055/90‑1 (MQ=255) cAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCg < 2:990114/90‑1 (MQ=255) aGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCgg > 2:85861/1‑90 (MQ=255) gaAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCa < 1:322619/90‑1 (MQ=255) gaAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCa > 1:472775/1‑90 (MQ=255) aaTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGacacgttacgaacagctacgcccgtgg > 2:123621‑M1/1‑63 (MQ=255) aaTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGc < 2:472775/90‑1 (MQ=255) aaTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCCCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGc < 1:333773/90‑1 (MQ=255) gCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCtt > 2:813359/1‑90 (MQ=255) ggTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCa < 2:370902/90‑1 (MQ=255) aTCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGacacgttacgaacagccacgcccgtgggataaagagctgat > 1:684688‑M1/1‑49 (MQ=255) aTCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACgg > 2:404030/1‑90 (MQ=255) aTCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACgg > 1:472852/1‑90 (MQ=255) aTCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACgg > 1:546050/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGc > 2:958285/1‑69 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGc < 1:958285/69‑1 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 2:588784/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc < 1:27551/90‑1 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 2:157216/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 2:563457/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 2:717313/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 1:461233/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc > 1:615947/1‑90 (MQ=255) atatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCCGATTTGCTCCGCCAGCGGGATCCGCTCTTTATCCCACGGGCGTaac > 1:271357/1‑88 (MQ=255) ggCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTc > 2:334589/1‑90 (MQ=255) ccGCGATACCGGCGCTATACTCCGCGCGCCAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctgccggagc < 1:123621‑M1/90‑56 (MQ=255) cgcgATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTa < 1:950128/90‑1 (MQ=255) cgcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacct > 1:90165‑M2/1‑85 (MQ=255) gcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacctg > 2:582591‑M2/1‑84 (MQ=255) gcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacctg < 1:743425‑M2/90‑7 (MQ=255) tataCTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacctggc < 2:208291‑M2/90‑9 (MQ=255) ataCTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacctggcg < 1:296758‑M2/90‑10 (MQ=255) taCTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTcacctggcgc > 2:4922‑M2/1‑80 (MQ=255) ccGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATc > 1:234315/1‑38 (MQ=255) ccGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATc < 2:234315/38‑1 (MQ=255) ccGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAgcg > 2:647294/1‑90 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATc < 1:73763/36‑1 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATc > 2:73763/1‑36 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGcgcc > 2:1147296/1‑90 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGcgcc > 2:847203/1‑90 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGcgcc > 2:831334/1‑90 (MQ=255) gcgcgcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGcgcc > 1:949197/1‑90 (MQ=255) gcgcCAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagta > 2:4922‑M1/1‑10 (MQ=255) cgcCAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagtat < 1:296758‑M1/90‑82 (MQ=255) gcCAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagtata < 2:208291‑M1/90‑83 (MQ=255) ccAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCAtt > 1:6009/1‑90 (MQ=255) cAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagtatagc < 1:743425‑M1/90‑85 (MQ=255) cAGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagtatagc > 2:582591‑M1/1‑6 (MQ=255) aGGTGacacgttacgaacagctacgcccgtgggataaagagctgatcccgctggcggagcaaatcagcacctggcgcgcggagtatagcg > 1:90165‑M1/1‑5 (MQ=255) ggTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTgcg < 2:1021101/90‑1 (MQ=255) gTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTgcgc < 1:336297/90‑1 (MQ=255) | AGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGC > NZ_CP009273/3873931‑3874102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |